Protein structure of Thymidilate Synthase A sounds like video-game music

That musical score above? It’s a piece of classical music based on the structures of the protein Thymidilate Synthase A. Some biologists at UCLA developed a set of nifty parameters for translating the structures into music, ran a couple of different proteins through them, and produced a pile of sheet music. You can check out the sheet music and listen to the MIDI files played via your browser’s built-in music module — a piano, in my case — here! (To listen to that specific bit of music pictured above, click here.)

Interestingly, the results sound eerily like the cheesy MIDI soundtracks to mid-80s side-scrolling arcade shoot-‘em-up games like Gradius or Scramble. I’d love it if a casual-game designer used use this stuff for a new Flash-based shooter!

There are also some possibly practical uses for this technique, too, listening to proteins is a novel way of analyzing their structures and how they work. As the researchers write:

Huntington’s disease is an example of a triplet repeat disorder in which an expansion of a repeated glutamine sequence causes the protein to lose its proper function. Such an expansion leads to a late-onset neurological disorder. The LacY permease protein spans the membrane of Escherichia coli and has a distinct hydrophobic region of phenylalanines. This sequence facilitates the protein to move through the bacterial membrane. In the Huntingtin example, one can hear an obvious repeated pattern of glutamines and polyprolines, and this pattern can be compared to the less obvious repeated pattern of phenylalanines heard in the LacY permease.

I love the idea of using music and sound as a new vector for studying biology. It reminds me a bit of Jim Gimzewsk’s work on “sonocytology” — listening to the vibrations of individual cells, which I blogged about two years ago.


blog comments powered by Disqus

Search This Site


Bio:

I'm Clive Thompson, a writer on science, technology, and culture. This blog collects bits of offbeat research I'm running into, and musings thereon.

Currently, I'm a contributing writer for the New York Times Magazine and a columnist for Wired magazine. I also write for Fast Company and Wired magazine's web site, among other places. Email or AOL IM me (pomeranian99) to say hi or send in something strange!

More of Me

Twitter
Tumblr
Flickr


Recent Entries

A long German word for “noticing when ads are being customized based on your surfing history”

Gay squid sex

“El Ajedrecista” — an analog chess-playing computer from 1912

Hacking the Model T

“How did you find my site?” and Vannevar Bush’s memex

» visit the Collision Detection archives

Clive Thompson's Tumblr
a bunch of stuff

May 20, 2011 » 02:28 PM

From Christopher Kennedy’s very droll book “Neitzsche’s Horse”.

July 28, 2010 » 07:35 AM
“Wr” - S

July 06, 2010 » 10:05 AM

My Xbox broke, and I was trying to Google some possible technical solutions, when I noticed that Google appears to be encouraging me to make a typo. I suppose it’s possible that Google’s algorithms know that typing “wont” instead of “won’t” would produce better results.

June 29, 2010 » 05:00 PM

On the other hand, when I tried the test for multitasking, I was pretty abysmal. I performed worse than people who identify themselves as heavy multitaskers, and those who identify as low multitaskers.

June 29, 2010 » 04:58 PM

I finally got around to trying out the interactive “test your distractability and multitasking” page at the New York Times, which they put up alongside their story earlier this month about how computer distractions are eroding our lives. 

According to the test, I guess I have good focus — I’m not very distractable! 

» visit my Tumblr

Recent Comments

Photos

» see all of my photos on Flickr

Collision Detection: A Blog by Clive Thompson