Protein structure of Thymidilate Synthase A sounds like video-game music

That musical score above? It’s a piece of classical music based on the structures of the protein Thymidilate Synthase A. Some biologists at UCLA developed a set of nifty parameters for translating the structures into music, ran a couple of different proteins through them, and produced a pile of sheet music. You can check out the sheet music and listen to the MIDI files played via your browser’s built-in music module — a piano, in my case — here! (To listen to that specific bit of music pictured above, click here.)

Interestingly, the results sound eerily like the cheesy MIDI soundtracks to mid-80s side-scrolling arcade shoot-‘em-up games like Gradius or Scramble. I’d love it if a casual-game designer used use this stuff for a new Flash-based shooter!

There are also some possibly practical uses for this technique, too, listening to proteins is a novel way of analyzing their structures and how they work. As the researchers write:

Huntington’s disease is an example of a triplet repeat disorder in which an expansion of a repeated glutamine sequence causes the protein to lose its proper function. Such an expansion leads to a late-onset neurological disorder. The LacY permease protein spans the membrane of Escherichia coli and has a distinct hydrophobic region of phenylalanines. This sequence facilitates the protein to move through the bacterial membrane. In the Huntingtin example, one can hear an obvious repeated pattern of glutamines and polyprolines, and this pattern can be compared to the less obvious repeated pattern of phenylalanines heard in the LacY permease.

I love the idea of using music and sound as a new vector for studying biology. It reminds me a bit of Jim Gimzewsk’s work on “sonocytology” — listening to the vibrations of individual cells, which I blogged about two years ago.


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I'm Clive Thompson, a writer on science, technology, and culture. This blog collects bits of offbeat research I'm running into, and musings thereon.

Currently, I'm a contributing writer for the New York Times Magazine and a columnist for Wired magazine. I also write for Fast Company and Wired magazine's web site, among other places. Email or AOL IM me (pomeranian99) to say hi or send in something strange!

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January 31, 2010 » 07:29 PM
V. A. To me death seems to be an evil.
M. What, to those who are al­ready dead? or to those who must die?
A. To both.
M. It is a mis­ery, then, be­cause an evil?
A. Cer­tain­ly.
M. Then those who have al­ready died, and those who have still got to die, are both mis­er­able?
A. So it ap­pears to me.
M. Then all are mis­er­able?
A. Ev­ery one.

January 24, 2010 » 03:22 PM

One of the more interesting trends is family, which came in at number five. Specifically, discussion about family, moms, dads, daughters, etc. jumped during 2009. With Facebook users getting older, this isn’t a big surprise. However, the fact that the mention of “kids” jumped by a factor of five this year is rather dramatic. It’s tough to know what this means, though. (via Facebook Unveils Most-Mentioned Topics of 2009

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January 15, 2010 » 01:36 PM

BEYOND AWESOME. They are announcing a recall of the Plush Uterus “due to a potential choking hazard for children”. To apply for it, “Please send an email to the address below with the subject line, ‘UTERUS OPT OUT’”.

January 14, 2010 » 10:04 PM

“To order, please TYPE “YES” IN CHECKBOX BELOW TO AGREE YOU UNDERSTAND THIS PLUSH MUST BE KEPT AWAY FROM KIDS (it is a sex organ, after all). If it is not checked, WE WILL NOT SEND THE UTERUS.” (via @ibogost)

January 11, 2010 » 01:45 PM

I watched Space: 1999 back in the day, but I swear to god I do not remember this scene.

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