Extremophiles discovered living in toxic goo from abandoned mine

Dig this: A couple of chemists have discovered new breeds of extremophiles -- organisms that survive incredibly caustic environments -- living at the bottom of an acidic copper-mine pit.
The Berkeley Pit is a copper mine that was abandoned in 1982; it's 1,780 feet deep and a mile and a half wide. In the last twenty-five years, it has filled with water, and as the water has soaked up the residual arsenic, aluminum, cadmium and zinc, the pond has turned as acidic as vinegar. In 1995, a couple hundred geese landed on the water and instantly died. Nice.
Nonetheless, Don and Andrea Stierl -- two chemists who live nearby -- wondered if any lifeforms could endure such grim surroundings, so they pulled out some of the pond's goo and cultured it in Petri dishes. Whaddya know: They've found 142 organisms in the muck, and have isolated 80 chemical compounds that exist nowhere else. Better yet, it looks as though some of those compounds might be useful in killing tumors!
As a terrific story in last week's New York Times pointed out:
Microbes react to harsh conditions in the Berkeley Pit by switching on genes that otherwise lay dormant or by evolving through mutation and natural selection, Mr. Stierle said. Either way, they produce new chemical compounds, which the Stierles hope may benefit human health.
The couple have become intimately acquainted with the personalities of these new microorganisms. The pit's strain of mycobacterium is a slimy, obstinate fungus that smells bad and is difficult to cultivate in a laboratory. But it has shown initial success in fighting some pathogens, Ms. Stierle said.
Then there is Penicillium rubrum, which is fuzzy and green like bread mold. "It's sweet, it grows, and this little guy produces large amounts of interesting compounds," she said. "It's one of the loveliest microbes we've ever worked with."
This story is a bouquet of all the things I love about science. It offers: a) A couple of total outsiders making discoveries by looking off the beaten path; b) proof once again that, quite apart from the sheer intellectual pleasures of exploring extreme environments, there's often enormous practical benefits in doing so; c) more evidence that we probably ought to preserve environmentally untouched zones of the Earth, because they probably harbor weird, cool and useful lifeforms; d) an even cooler suggestion that we also ought to be carefully studying the total toxic wreck-dumps left behind by industrial pollution, because, man, who knows, eh?
And best of all, e): Yet more experimental proof that the principle of evolution works precisely as it's been described for decades.
That picture above, by Lynn Donaldson, beautifully illustrated the Times piece. Go check it out in full-size.
Posted by Clive Thompson at October 16, 2007 11:11 AM
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Not to take anything away from the interesting work (though I'm baffled by the conflation of "mycobacterium" and "fungus") -- but sampling extremophiles from mining waste is far from "off the beaten path"; it's now an immediately obvious thing to do. A bunch of fascinating extremophiles have been identified in mining wastes dating back some 40 years, and some of them are quite famous -- for one example see
K.J. Edwards, P.L. Bond, T.M. Gihring, J.F. Banfield, An archaeal iron-oxidizing extreme acidophile important in acid mine drainage. Science 287 (2000) 1796–1799.
If you're interested in more, there's a review in
Res Microbiol. 2003 Sep;154(7):466-73.
The microbiology of acidic mine waters.
Johnson DB, Hallberg KB.
But there are also quite a few articles since then.
Posted by: iayork at October 16, 2007 11:51 AM
My favorite thing about this story is that it was on The Daily Show *months* ago. Where DO we get our news from, indeed?
Posted by: Steve Portigal at October 16, 2007 12:33 PM
There is a fantastic documentary called An Injury to One that covers the history of that same pit. It begins in the late 1800s and goes through to the 1990s with the mass death of the geese that landed there.
It starts out with the struggle between labor unions and corporations. Covers the death of labor agitator Frank Little. Touches on Dashiell Hammett's time there as a Pinkerton. Then goes into the environmental impact the mine has had.
Posted by: Matt M. at October 16, 2007 11:34 PM
iayork, excellent! I didn't know it was becoming accepted wisdom ... that's even cooler.
Steve, yeah, I'm slow. I also don't watch the Daily Show, unfortunately. Actually, I don't watch any TV, alas.
Matt, cool -- I suspected that pit would have some radioactively ugly labor history; interesting to know some details.
Posted by: Clive at October 17, 2007 2:29 PM
"Microbes react to harsh conditions in the Berkeley Pit by switching on genes that otherwise lay dormant or by evolving through mutation and natural selection."
The first half of that explanation isn't evolution; it's called epigenetics. It's unfathomable to me that epigenetics would be wholly responsible for their survival, but the microbes don't count as evidence for evolution until epigenetics are wholly ruled out.
we should never let what we'd like to think dictate our reality, eh? that would be unscientific.
Posted by: danielporter at November 19, 2007 1:51 PM
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Not to take anything away from the interesting work (though I'm baffled by the conflation of "mycobacterium" and "fungus") -- but sampling extremophiles from mining waste is far from "off the beaten path"; it's now an immediately obvious thing to do. A bunch of fascinating extremophiles have been identified in mining wastes dating back some 40 years, and some of them are quite famous -- for one example see
K.J. Edwards, P.L. Bond, T.M. Gihring, J.F. Banfield, An archaeal iron-oxidizing extreme acidophile important in acid mine drainage. Science 287 (2000) 1796–1799.
If you're interested in more, there's a review in
Res Microbiol. 2003 Sep;154(7):466-73.
The microbiology of acidic mine waters.
Johnson DB, Hallberg KB.
But there are also quite a few articles since then.
Posted by: iayork
at October 16, 2007 11:51 AM
My favorite thing about this story is that it was on The Daily Show *months* ago. Where DO we get our news from, indeed?
Posted by: Steve Portigal
at October 16, 2007 12:33 PM
There is a fantastic documentary called An Injury to One that covers the history of that same pit. It begins in the late 1800s and goes through to the 1990s with the mass death of the geese that landed there.
It starts out with the struggle between labor unions and corporations. Covers the death of labor agitator Frank Little. Touches on Dashiell Hammett's time there as a Pinkerton. Then goes into the environmental impact the mine has had.
Posted by: Matt M.
at October 16, 2007 11:34 PM
iayork, excellent! I didn't know it was becoming accepted wisdom ... that's even cooler.
Steve, yeah, I'm slow. I also don't watch the Daily Show, unfortunately. Actually, I don't watch any TV, alas.
Matt, cool -- I suspected that pit would have some radioactively ugly labor history; interesting to know some details.
Posted by: Clive
at October 17, 2007 2:29 PM
"Microbes react to harsh conditions in the Berkeley Pit by switching on genes that otherwise lay dormant or by evolving through mutation and natural selection."
The first half of that explanation isn't evolution; it's called epigenetics. It's unfathomable to me that epigenetics would be wholly responsible for their survival, but the microbes don't count as evidence for evolution until epigenetics are wholly ruled out.
we should never let what we'd like to think dictate our reality, eh? that would be unscientific.
Posted by: danielporter
at November 19, 2007 1:51 PM