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Extremophiles discovered living in toxic goo from abandoned mine

Dig this: A couple of chemists have discovered new breeds of extremophiles — organisms that survive incredibly caustic environments — living at the bottom of an acidic copper-mine pit.

The Berkeley Pit is a copper mine that was abandoned in 1982; it’s 1,780 feet deep and a mile and a half wide. In the last twenty-five years, it has filled with water, and as the water has soaked up the residual arsenic, aluminum, cadmium and zinc, the pond has turned as acidic as vinegar. In 1995, a couple hundred geese landed on the water and instantly died. Nice.

Nonetheless, Don and Andrea Stierl — two chemists who live nearby — wondered if any lifeforms could endure such grim surroundings, so they pulled out some of the pond’s goo and cultured it in Petri dishes. Whaddya know: They’ve found 142 organisms in the muck, and have isolated 80 chemical compounds that exist nowhere else. Better yet, it looks as though some of those compounds might be useful in killing tumors!

As a terrific story in last week’s New York Times pointed out:

Microbes react to harsh conditions in the Berkeley Pit by switching on genes that otherwise lay dormant or by evolving through mutation and natural selection, Mr. Stierle said. Either way, they produce new chemical compounds, which the Stierles hope may benefit human health.

The couple have become intimately acquainted with the personalities of these new microorganisms. The pit’s strain of mycobacterium is a slimy, obstinate fungus that smells bad and is difficult to cultivate in a laboratory. But it has shown initial success in fighting some pathogens, Ms. Stierle said.

Then there is Penicillium rubrum, which is fuzzy and green like bread mold. “It’s sweet, it grows, and this little guy produces large amounts of interesting compounds,” she said. “It’s one of the loveliest microbes we’ve ever worked with.”

This story is a bouquet of all the things I love about science. It offers: a) A couple of total outsiders making discoveries by looking off the beaten path; b) proof once again that, quite apart from the sheer intellectual pleasures of exploring extreme environments, there’s often enormous practical benefits in doing so; c) more evidence that we probably ought to preserve environmentally untouched zones of the Earth, because they probably harbor weird, cool and useful lifeforms; d) an even cooler suggestion that we also ought to be carefully studying the total toxic wreck-dumps left behind by industrial pollution, because, man, who knows, eh?

And best of all, e): Yet more experimental proof that the principle of evolution works precisely as it’s been described for decades.

That picture above, by Lynn Donaldson, beautifully illustrated the Times piece. Go check it out in full-size.


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I'm Clive Thompson, a writer on science, technology, and culture. This blog collects bits of offbeat research I'm running into, and musings thereon.

Currently, I'm a contributing writer for the New York Times Magazine and a columnist for Wired magazine. I also write for Fast Company and Wired magazine's web site, among other places. Email or AOL IM me (pomeranian99) to say hi or send in something strange!

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September 26, 2008 » 01:57 PM

From an interview with ethnobotanist and anthropologist Wade Davis:

One of the cultures you celebrate in Light at the Edge of the World is the Inuit. What do you most admire about them?

Davis: The Inuit didn’t fear the cold; they took advantage of it. During the 1950s the Canadian government forced the Inuit into settlements. A family from Arctic Bay told me this fantastic story of their grandfather who refused to go. The family, fearful for his life, took away all of his tools and all of his implements, thinking that would force him into the settlement. But instead, he just slipped out of an igloo on a cold Arctic night, pulled down his caribou and sealskin trousers, and defecated into his hand. As the feces began to freeze, he shaped it into the form of an implement. And when the blade started to take shape, he put a spray of saliva along the leading edge to sharpen it. That’s when what they call the “shit knife” took form. He used it to butcher a dog. Skinned the dog with it. Improvised a sled with the dog’s rib cage, and then, using the skin, he harnessed up an adjacent living dog. He put the shit knife in his belt and disappeared into the night.

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